DNBSEQ自主平台植物研究发表文章
| 物种 | 文献名称 | 期刊 | 发表年份 |
| SAV-CoV-2 | Genomic epidemiology of a densely sampled COVID19 outbreak in China | Virus Evolution | 2021 |
| strain BY4742 | Disome-seq reveals widespread ribosome collisions that promote cotranslational protein folding | Genome Biology | 2021 |
| 大肠杆菌 | Genome recombination-mediated tRNA up-regulation conducts general antibiotic resistance of bacteria at early stage | Frontiers in Microbiology | 2021 |
| 植物乳杆菌 | Lactobacillus Plantarum 299v Changes miRNA Expression in the Intestines of Piglets and Leads to Downregulation of LITAF by Regulating ssc-miR-450a | Probiotics and Antimicrobial Proteins | 2021 |
| SAV-CoV-2 | Population Bottlenecks and Intra-host Evolution during Human-to-Human Transmission of SARS-CoV-2Population Bottlenecks and Intra-host Evolution during Human-to-Human Transmission of SARS-CoV-2 | Frontiers in Medicine | 2021 |
| SAV-CoV-2 | Intra-host Variation and Evolutionary Dynamics of SARS-CoV-2 Population in COVID-19 Patients | Genome Medicine | 2021 |
| 肺孢子菌属 | Genomic insights into the host specific adaptation of the Pneumocystis genus | Communications Biology | 2021 |
| SARS-CoV-2 | COVID-19 patient transcriptomic and genomic profiling reveals comorbidity interactions with psychiatric disorders | Translational Psychiatry | 2021 |
| 病毒 | Establishment of a Reverse Genetic System of Severe Fever with Thrombocytopenia Syndrome Virus Based on a C4 Strain | Virologica Sinica | 2021 |
| 登革热 | Emergence and Autochthonous Transmission of Dengue Virus Type I in a Low-Epidemic Region in Southeast China | Frontiers in Cellular and Infection Microbiology | 2021 |
| 绿脓杆菌 | An atlas of the binding specificities of transcription factors in Pseudomonas aeruginosa directs prediction of novel regulators in virulence | Elife | 2021 |
| SARS-CoV-2 | Characterization of respiratory microbial dysbiosis in hospitalized COVID-19 patients | Cell Discovery | 2021 |
| SARS-CoV-2 | Serological investigation of asymptomatic cases of SARS-CoV-2 infection reveals weak and declining antibody responses | Emerging Microbes & Infections | 2021 |
| SARS-CoV-2 | Genetic Mutation of SARS-CoV-2 during Consecutive Passages in Permissive Cells | Virologica Sinica | 2021 |
| 微生物 | Fish farm effluents as a source of antibiotic resistance gene dissemination on Jeju Island, South Korea | Environmental Pollution | 2021 |
| SARS-CoV-2 | RNA-induced liquid phase separation of SARS-CoV-2 nucleocapsid protein facilitates NF-κB hyper-activation and inflammation | Signal Transduction and Targeted Therapy | 2021 |
| 真菌 | Three putative DNA methyltransferases of Verticillium dahliae differentially contribute to DNA methylation that is dispensable for growth, development and virulence | Epigenetics & Chromatin | 2021 |
| 镰刀菌 | The Whole Genome Sequence of Fusarium redolens strain YP04, a Pathogen that Causes Root Rot of American Ginseng | Phytopathology | 2021 |
| 线虫 | Antioxidant and reducing lipid accumulation effects of rutin in Caenorhabditis elegans | BioFactors | 2021 |
| 红酵母 | Responses of Rhodotorula mucilaginosa under Pb(II) stress: carotenoid production and budding | Environmental Microbiology | 2021 |
| 病原体 | Weissella confusa CGMCC 19,308 Strain Protects Against Oxidative Stress, Increases Lifespan, and Bacterial Disease Resistance in Caenorhabditis elegans | Probiotics and Antimicrobial Proteins | 2021 |
| SAV-CoV-2 | Time-series plasma cell-free DNA analysis reveals disease severity of COVID-19 patients | Froniters in Genetics | 2021 |
| 病原体 | Metagenomic diagnosis of severe psittacosis using multiple sequencing platforms | BMC Genomics | 2021 |
| 微生物 | Perspectives and benefits of high-1 throughput long-read sequencing in microbial ecology | Applied and Environmental Microbiology | 2021 |
| 真菌 | Phosphorus deficiency in soils with red color: Insights from the interactions between minerals and microorganisms | Geoderma | 2021 |
| 微生物组 | Cervico-vaginal microbiome dynamics after taking oral probiotics | Journal of Genetics and Genomics | 2021 |
| SARS-CoV-2 | Next-Generation Sequencing (NGS) in COVID-19: A Tool for SARS-CoV-2 Diagnosis, Monitoring New Strains and Phylodynamic Modeling in Molecular Epidemiology | Current Issues in Molecular Biology | 2021 |
| review | Metagenomic Sequencing as a Pathogen-Agnostic Clinical Diagnostic Tool for Infectious Diseases: a Systematic Review and Meta-analysis of Diagnostic Test Accuracy Studies | Journal of Clinical Microbiology | 2021 |
| 嗜麦芽窄食单胞菌 | Comparative insights into multiple drug resistance determinants found in Stenotrophomonas maltophilia MER1 | Journal of Global Antimicrobial Resistance | 2021 |
| 毕赤酵母 | Screening and evaluation of the strong endogenous promoters in Pichia pastoris | Microbial Cell Factories | 2021 |
| 腺病毒 | Shell-mediated phagocytosis to reshape viral-vectored vaccine-induced immunity | Biomaterials | 2021 |
| 白僵菌 | The Tudor Domain-Containing Protein BbTdp1 Contributes to Fungal Cell Development, the Cell Cycle, Virulence, and Transcriptional Regulation in the Insect Pathogenic Fungus Beauveria bassiana | Jorunal of Clinical Microbiogy | 2021 |
| 细菌 | A Rickettsiella endosymbiont is a potential source of essential B-vitamins for the poultry red mite, Dermanyssus gallinae | Froniters in Microbiology | 2021 |
| 曲霉菌 | Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species | BMC Biology | 2021 |
| 弹状病毒 | First report of black currant-associated rhabdovirus in blackcurrants in Latvia | Plant Disease | 2021 |
| 副干酪乳杆菌 | Differences in Acid Stress Response of Lacticaseibacillus paracasei Zhang Cultured from Solid-State Fermentation and Liquid-State Fermentation | Microorganisms | 2021 |
| 幽门螺杆菌 | Glycosaminoglycan biosynthesis pathway in host genome is associated with Helicobacter pylori infection | Scientific Reports | 2021 |
| 宏基因组 | Fusion plasmid carrying the colistin resistance gene mcr of Escherichia coli isolated from healthy residents. | Journal of Global Antimicrobial Resistance | 2021 |
| 核酸外切酶 | Reusable and Sensitive Detection Method for Exonuclease III Activity by DNB Nanoarrays Based on cPAS Sequencing Technology | Enzyme and Microbial Technology | 2021 |
| 卵菌 | Specific interaction of an RNA-binding protein with the 30-UTR of its target mRNA is critical to oomycete sexual reproduction | PLoS Pathogens | 2021 |
| 奇异变形杆菌 | Novel
Phage-Derived Depolymerase with Activity against Proteus mirabilis Biofilms |
Microorganisms | 2021 |
| 构巢曲霉 | Genome-wide analyses of light-regulated genes in Aspergillus nidulans reveal a complex interplay between different photoreceptors and novel photoreceptor functions | PLoS Genetics | 2021 |
| SAV-CoV-2 | Upregulation of Human Endogenous Retroviruses in Bronchoalveolar Lavage Fluid of COVID-19 Patients | Microbiology Spectrum | 2021 |
| 红杆菌 | Population Differentiation of Rhodobacteraceae Along Coral Compartments | ISME Journal | 2021 |
| 肠道宏基因组 | Mendelian randomization analyses support causal relationships between blood metabolites and the gut microbiome | Nature Genetics | 2022 |
| 真菌 | Local rather than global H3K27me3 dynamics associates with differential gene expression in Verticillium dahliae | mBio | 2022 |
| 猪流行性腹泻 | Genome-wide transcriptome analysis of porcine epidemic diarrhea virus virulent or avirulent strain-infected porcine small intestinal epithelial cells | Virologica Sinica | 2022 |
| 宏基因组 | Life History Recorded in the Vagino-cervical Microbiome Along with Multi-omes | Genomics, Proteomics & Bioinformatics | 2022 |
| 宏基因组 | Over 50000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxa | Genomics, Proteomics & Bioinformatics | 2022 |
| 梭状芽孢杆菌 | Complete genome sequence of Crassaminicella sp. 143-21，isolated from a deep-sea hydrothermal vent | Marine Genomics | 2022 |
| 磁性微生物 | A Novel Isolate of Spherical Multicellular Magnetotactic Prokaryotes Has Two Magnetosome Gene Clusters and Synthesizes Both Magnetite and Greigite Crystals | Microorganisms | 2022 |
| 海水 | Novel Chloroflexi genomes from the deepest ocean reveal metabolic strategies for the adaptation to deep-sea habitats | Microbiome | 2022 |
| 宏基因组 | Horizontal transfer of a plasmid possessing mcr-1 marked with a single nucleotide mutation between Escherichia coli isolates from community residents. | BMC Medical Research Methodology | 2022 |
| 根际土壤 | Rhizosphere soil microbial community and its response to different utilization patterns in the semi-arid alpine grassland of northern Tibet | Frontiers in Microbiology | 2022 |
| 阴道微生物 | Vaginal microbiota and personal risk factors associated with HPV status conversion—A new approach to reduce the risk of cervical cancer? | Plos One | 2022 |
| 16S/18S/ITS扩增子 | Sequencing introduced false positive rare taxa lead to biased microbial community diversity, assembly, and interaction interpretation in amplicon studies | Environmental Microbiome | 2022 |
| 粪便 | Genomic and microbial factors affect the prognosis of anti-pd-1 immunotherapy in nasopharyngeal carcinoma | Frontiers in Oncology | 2022 |
| SARS-Cov-2 | Suppression of ACE2 SUMOylation protects against SARS-CoV-2 infection through TOLLIP-mediated selective autophagy | Nature Communication | 2022 |
| 肺泡液 | Genomic characterization of two metagenome-assembled genomes of Tropheryma whipplei from China | Frontiers in Cellular and Infection Microbiology | 2022 |
| 酵母菌株 | Systematic dissection of key factors governing recombination outcomes by GCE-SCRaMbLE | Nature Communication | 2022 |
| 土壤真菌 | Leguminous cover crops and soya increased soil fungal diversity and suppressed pathotrophs caused by continuous cereal cropping | Frontiers in Microbiology | 2022 |
| 黑酵母 | Clonality, inbreeding, and hybridization in two extremotolerant black yeasts | Gigascience | 2022 |
| 谷物/土壤 | GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet | Nature Communications | 2022 |
| 肠道宏基因组 | Metagenomic Analysis of Gut Microbiome in Gout Patients with Different Chinese Traditional Medicine Treatments | Evidence-Based Complementary and Alternative Medicine | 2022 |
| 质粒 | One Health Analysis of mcr-Carrying Plasmids and Emergence of mcr-10.1 in Three Species of Klebsiella Recovered from Humans in China | Microbiology Spectrum | 2022 |
| 肺炎克雷伯菌 | Genome-wide association study of Klebsiella pneumoniae identifies variations linked to carbapenems resistance | Frontiers in Microbiology | 2022 |
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